STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2566Dipeptidase. (398 aa)    
Predicted Functional Partners:
LO55_2567
Beta-lactamase family protein.
 
    0.859
LO55_2569
tonB dependent receptor family protein.
 
     0.802
LO55_2568
Hypothetical protein.
       0.799
LO55_2572
Beta-lactamase family protein.
 
    0.780
LO55_2571
Hypothetical protein; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain protein.
     
 0.715
LO55_2570
yjdL_sub1_fam: amino acid/peptide transporter family protein.
   
   0.707
LO55_2035
Peptidase C26 family protein.
      0.650
LO55_1860
Peptidase C26 family protein.
      0.600
LO55_4086
Lycopene cyclase family protein.
 
 
  0.536
LO55_2573
Helix-turn-helix family protein.
       0.466
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.