STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2575ABC transporter family protein. (245 aa)    
Predicted Functional Partners:
LO55_2574
ftsX-like permease family protein.
 0.998
LO55_2576
RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.950
LO55_880
ftsX-like permease family protein.
 
 0.927
LO55_1125
ftsX-like permease family protein.
 
 0.917
LO55_1126
ftsX-like permease family protein.
 
 0.916
LO55_2646
ftsX-like permease family protein.
 
 0.915
LO55_879
ftsX-like permease family protein.
 
 0.884
LO55_638
ftsX-like permease family protein.
 
 0.877
LO55_4369
lolCE: liporeleasing system, transmembrane, LolC/E family protein.
  
 0.817
LO55_4370
lolCE: liporeleasing system, transmembrane, LolC/E family protein.
  
 0.817
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.