STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2632Glycosyltransferase 36 family protein. (781 aa)    
Predicted Functional Partners:
gph-2
Phosphoglycolate phosphatase; Sugar (Glycoside-Pentoside-Hexuronide) transporter domain protein; gph: sugar (Glycoside-Pentoside-Hexuronide) transporter domain protein.
 
     0.791
LO55_4400
GDSL-like Lipase/Acylhydrolase family protein.
    
 0.744
LO55_3152
Glycosyl hydrolases 43 family protein; Belongs to the glycosyl hydrolase 43 family.
  
  
 0.723
pulA
Alpha-1,6-glucosidase; Pullulanase-type domain protein; pullul_strch: alpha-1,6-glucosidases, pullulanase-type domain protein; Belongs to the glycosyl hydrolase 13 family.
  
  
 0.662
LO55_2302
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein.
    
 0.654
galU
galU: UTP--glucose-1-phosphate uridylyltransferase.
    
  0.649
LO55_2104
Hypothetical protein; Phosphoglucomutase/phosphomannomutase, C-terminal domain protein.
    
 0.648
exoP
Exo-1,3/1,4-beta-glucanase; Belongs to the glycosyl hydrolase 3 family.
 
  
 0.642
pel
Pectate lyase.
  
  
  0.639
LO55_81
Hypothetical protein; Glycosyl hydrolase family 3 N terminal domain protein.
    
 0.629
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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