STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2641Ferritin-like domain protein; Belongs to the Dps family. (171 aa)    
Predicted Functional Partners:
clpS
ATP-dependent Clp protease adaptor ClpS family protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
   
 
 0.971
LO55_4843
Hypothetical protein.
  
    0.875
LO55_568
Hypothetical protein.
  
    0.875
LO55_2421
Hypothetical protein; prkA serine kinase C-terminal domain protein.
   
    0.848
ahpC
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
 
  
 0.828
LO55_2391
Hypothetical protein; C-terminal domain of 1-Cys peroxiredoxin family protein.
  
  
 0.791
raiA
yfiA: ribosomal subunit interface protein.
  
    0.775
LO55_140
Sigma 54 modulation / S30EA ribosomal family protein.
  
    0.775
LO55_1848
osmo_induc_OsmC: peroxiredoxin, OsmC subfamily protein.
  
  
 0.719
LO55_1640
Organ_hyd_perox: peroxiredoxin, Ohr subfamily protein.
  
  
 0.700
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.