Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_265fliI_yscN: ATPase, FliI/YscN family protein. (437 aa)    
Predicted Functional Partners:
LO55_263
fliG N-terminal domain protein.
 
 
 0.991
LO55_264
Hypothetical protein; Essential Yae1, N terminal family protein.
 
 
 0.990
fliF-2
fliF: flagellar M-ring protein FliF.
 
  
 0.989
fliN
fliN: flagellar motor switch protein FliN.
 
 
 0.984
LO55_259
Surface presentation of antigens family protein.
 
 
 0.984
LO55_254
FHIPEP family protein.
 
 
 0.973
LO55_255
flhB HrpN YscU SpaS family protein.
 
 
 0.973
fliP-2
Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
 
  
 0.973
fliQ-2
Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.
 
  
 0.965
fliJ
flagell_FliJ: flagellar export protein FliJ.
  
 
 0.964
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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