STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2668Putative transmembrane protein. (321 aa)    
Predicted Functional Partners:
LO55_4230
Ankyrin repeat family protein.
  
 
 0.877
LO55_3861
Ankyrin repeat family protein.
    
 0.858
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
     
 0.804
LO55_2695
His Kinase A domain protein.
  
 
 0.799
LO55_1189
Dihydroneopterin aldolase family protein.
  
  
 0.787
LO55_3464
HAMP domain protein.
  
 
 0.766
LO55_3639
His Kinase A domain protein.
  
 
 0.766
LO55_4555
Sensory box protein.
    
 0.757
LO55_929
Hypothetical protein.
  
  
 0.756
LO55_4955
Sensory box protein.
    
 0.750
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.