STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2673Carboxymuconolactone decarboxylase family protein. (256 aa)    
Predicted Functional Partners:
LO55_2670
Cupin family protein.
  
 0.987
LO55_2671
araC-like ligand binding domain protein.
  
 0.984
purB
purB: adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.816
LO55_1443
Ketopantoate reductase PanE/ApbA family protein.
 
 
 0.791
LO55_5186
Tartro_sem_red: 2-hydroxy-3-oxopropionate reductase.
  
 
 0.764
LO55_8
Tartro_sem_red: 2-hydroxy-3-oxopropionate reductase.
  
 
 0.764
LO55_4359
Dioxygenase family protein.
  
 
 0.755
LO55_3112
pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit.
  
 
 0.705
LO55_3506
pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit.
  
 
 0.705
icmF
Hypothetical protein; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
    
  0.695
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.