STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fimVfimV_core: FimV N-terminal domain. (1027 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine(38-40) synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.919
LO55_2094
cheW-like domain protein.
  
  
 0.863
LO55_1045
Fimbrial assembly family protein.
  
  
 0.820
LO55_1044
Pilus assembly, PilO family protein.
  
  
 0.818
LO55_2091
cheW-like domain protein.
  
  
  0.800
pilQ
IV_pilus_PilQ: type IV pilus secretin PilQ family protein.
  
  
 0.782
LO55_3194
Hypothetical protein.
  
   
 0.767
LO55_4233
pilZ domain protein.
  
     0.765
LO55_1043
Pilus assembly, PilP family protein.
  
  
 0.760
LO55_331
Hypothetical protein.
  
     0.758
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.