STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_274Membrane MotB of proton-channel complex MotA/MotB family protein. (315 aa)    
Predicted Functional Partners:
motA
motA1: flagellar motor stator protein MotA.
 
 0.999
motA-2
motA1: flagellar motor stator protein MotA.
 
 0.998
LO55_2446
motA/TolQ/ExbB proton channel family protein.
  
 0.992
LO55_272
fliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family protein; Belongs to the sigma-70 factor family.
  
  
 0.963
flgK-2
flgK_ends: flagellar hook-associated protein FlgK.
 
  
 0.954
LO55_3001
Sensory box protein.
  
  
 0.949
LO55_3436
HAMP domain protein.
  
  
 0.949
LO55_2168
Sensory box protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
  
 0.936
LO55_3631
Sensory box protein.
  
  
 0.936
LO55_3280
Response regulator.
  
  
 0.932
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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