STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2745phoH-like family protein. (610 aa)    
Predicted Functional Partners:
LO55_2421
Hypothetical protein; prkA serine kinase C-terminal domain protein.
   
  
 0.699
LO55_2420
Hypothetical protein; Belongs to the UPF0229 family.
   
    0.634
LO55_2419
spoVR like family protein.
   
    0.602
LO55_2746
Redoxin family protein.
       0.489
LO55_2744
YCII-related domain protein.
       0.473
LO55_3597
Outer membrane family protein.
  
     0.447
LO55_2747
Hypothetical protein.
 
     0.444
yddG
Inner membrane protein yddG.
   
    0.430
hrcA
Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.
  
   
 0.422
LO55_4324
Methyltransferase domain protein.
  
     0.408
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.