STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2748Aminotransferase class-V family protein. (407 aa)    
Predicted Functional Partners:
LO55_2749
ACT domain protein.
  
 0.882
LO55_1548
Glutamine amidotransferases class-II family protein.
    
 0.808
LO55_1409
Aminotransferase class IV family protein.
   
 0.783
LO55_1157
Aminotransferase class-V family protein.
  
 0.782
lpdA
lipoamide_DH: dihydrolipoyl dehydrogenase.
  
 0.772
pheA
CM_P2: chorismate mutase.
 
 
 0.770
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 
 0.760
LO55_1199
Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.
    
 0.758
LO55_4021
Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.
    
 0.758
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.756
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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