STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
flgM-2flgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM. (90 aa)    
Predicted Functional Partners:
LO55_272
fliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family protein; Belongs to the sigma-70 factor family.
  
 0.995
fliA
RNA polymerase sigma factor, FliA/WhiG family protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
  
 0.990
fliS
fliS: flagellar protein FliS.
  
 
 0.987
fliS-2
fliS: flagellar protein FliS.
  
 
 0.987
LO55_276
flgN family protein.
  
  
 0.978
LO55_271
Flagellar basal body-associated FliL family protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
  
 0.949
LO55_2469
flgN family protein.
  
  
 0.907
flgK
flgK_ends: flagellar hook-associated protein FlgK.
  
  
 0.903
flgK-2
flgK_ends: flagellar hook-associated protein FlgK.
  
  
 0.903
LO55_2492
Flagellar basal body-associated FliL family protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
  
 0.901
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.