Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_27712OG-Fe(II) oxygenase superfamily protein. (227 aa)    
Predicted Functional Partners:
LO55_3404
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
  
 0.943
LO55_3022
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
  
 0.836
LO55_1615
tonB dependent receptor family protein.
 
  
 0.812
LO55_3610
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
  
 0.795
LO55_1431
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
  0.739
LO55_3085
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
    0.580
LO55_3070
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
    0.571
LO55_3794
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
    0.556
LO55_4651
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
    0.547
LO55_215
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
    0.538
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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