STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2802Sugar (and other) transporter family protein. (451 aa)    
Predicted Functional Partners:
LO55_2801
Molybdopterin-binding domain of aldehyde dehydrogenase family protein.
 
     0.818
LO55_2800
FAD binding domain in molybdopterin dehydrogenase family protein.
 
     0.803
LO55_2798
AMP-binding enzyme family protein.
 
  
  0.771
LO55_2799
[2Fe-2S] binding domain protein.
       0.768
LO55_2795
enoyl-CoA hydratase/isomerase family protein.
 
     0.671
ubiX-2
Polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
       0.644
LO55_2797
Decarboxylase, UbiD family protein; Belongs to the UbiD family.
       0.644
LO55_2794
acyl-CoA reductase family protein.
    
  0.641
LO55_2803
FAD dependent oxidoreductase family protein.
    
  0.636
LO55_2793
Gram-negative porin family protein.
       0.509
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.