Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_2803FAD dependent oxidoreductase family protein. (588 aa)    
Predicted Functional Partners:
LO55_2797
Decarboxylase, UbiD family protein; Belongs to the UbiD family.
    
  0.836
ubiX-2
Polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
    
  0.820
LO55_401
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
  
 
 0.767
LO55_3328
2Fe-2S iron-sulfur cluster binding domain protein.
 
  
 0.766
LO55_2435
Putative phospholipase A1; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family.
     
  0.740
LO55_4192
PC_PLC: phospholipase C, phosphocholine-specific.
     
  0.740
LO55_2794
acyl-CoA reductase family protein.
  
 
 0.735
LO55_2012
2Fe-2S iron-sulfur cluster binding domain protein.
    
 0.716
LO55_3861
Ankyrin repeat family protein.
    
 0.712
LO55_4230
Ankyrin repeat family protein.
    
 0.712
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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