STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2803FAD dependent oxidoreductase family protein. (588 aa)    
Predicted Functional Partners:
LO55_3861
Ankyrin repeat family protein.
    
 0.904
LO55_4230
Ankyrin repeat family protein.
    
 0.904
LO55_2352
Peptidase M49 family protein.
    
 0.871
LO55_2414
Tetratricopeptide repeat family protein.
    
 0.871
LO55_4599
TPR repeat family protein.
    
 0.871
LO55_82
Tetratricopeptide repeat family protein.
    
 0.871
LO55_2797
Decarboxylase, UbiD family protein; Belongs to the UbiD family.
    
  0.764
LO55_2794
acyl-CoA reductase family protein.
  
 
 0.755
LO55_4074
Cytochrome c family protein.
   
 
 0.749
coxB-2
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.740
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.