Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LO55_2813pepSY-associated TM helix family protein. (237 aa)    
Predicted Functional Partners:
LO55_2812
Hypothetical protein.
   
 0.988
LO55_2811
Hypothetical protein.
 
   
 0.943
LO55_2810
apbE family protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
     0.864
LO55_2809
Flavodoxin family protein.
 
     0.859
LO55_3339
Flavodoxin family protein.
 
    0.711
LO55_3160
tonB-Xanth-Caul: TonB-dependent receptor family protein.
 
     0.698
LO55_4654
pepSY-associated TM helix family protein.
 
  
 0.547
LO55_939
tonB-Xanth-Caul: TonB-dependent receptor family protein.
 
     0.545
LO55_3663
tonB-Xanth-Caul: TonB-dependent receptor family protein.
 
     0.513
LO55_3809
tonB-Xanth-Caul: TonB-dependent receptor family protein.
 
     0.505
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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