STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2819Phosphatase 2C family protein. (261 aa)    
Predicted Functional Partners:
lpdA
lipoamide_DH: dihydrolipoyl dehydrogenase.
  
 0.975
LO55_4472
Kinase domain protein.
 
 0.941
LO55_2529
Kinase domain protein.
 
 0.903
bkdA2
2-oxoisovalerate dehydrogenase subunit beta.
   
 0.888
LO55_2622
Tyrosine kinase family protein.
 
 0.868
LO55_2504
Tetratricopeptide repeat family protein.
 
 0.860
LO55_3442
Restriction endonuclease family protein.
  
 
 0.844
aqpZ2
Aquaporin Z 2; Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
   0.838
LO55_1629
Hypothetical protein.
    
 0.824
LO55_4484
Tyrosine kinase family protein.
 
 0.821
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.