STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilFtype_IV_pilW: type IV pilus biogenesis/stability protein PilW. (273 aa)    
Predicted Functional Partners:
rlmN
23S rRNA (adenine(2503)-C(2))-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
  
    0.807
LO55_1046
pilM: type IV pilus assembly PilM family protein.
  
   
 0.792
LO55_1043
Pilus assembly, PilP family protein.
  
   
 0.785
LO55_1044
Pilus assembly, PilO family protein.
  
   
 0.779
LO55_1045
Fimbrial assembly family protein.
  
   
 0.771
LO55_679
lysM domain protein.
  
     0.766
LO55_4233
pilZ domain protein.
  
   
 0.761
pilQ
IV_pilus_PilQ: type IV pilus secretin PilQ family protein.
  
   
 0.757
LO55_2058
Sensory box protein.
  
  
  0.746
fimV
fimV_core: FimV N-terminal domain.
  
   
 0.728
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.