STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2860tonB-siderophor: TonB-dependent siderophore receptor family protein. (713 aa)    
Predicted Functional Partners:
LO55_3311
tonB-siderophor: TonB-dependent siderophore receptor family protein.
  
  
 0.720
purT
Phosphoribosylglycinamide formyltransferase 2; Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate; Belongs to the PurK/PurT family.
       0.578
LO55_1454
PAAR motif family protein.
    
   0.546
LO55_2556
Putative rhs element Vgr protein.
    
   0.546
LO55_2949
PAAR motif family protein.
    
   0.546
LO55_1165
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
 
 
 0.545
LO55_2249
tonB dependent receptor family protein.
  
  
 0.542
LO55_2891
6-hydroxynicotinate 3-monooxygenase.
   
  
 0.494
LO55_2082
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
  
 
 0.486
LO55_2418
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
  
 
 0.486
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.