Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LO55_2876Major Facilitator Superfamily protein. (557 aa)    
Predicted Functional Partners:
LO55_2877
RND_mfp: efflux transporter, RND family, MFP subunit.
 
 
 0.981
LO55_2878
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
 
 
 0.860
LO55_3845
RND_mfp: efflux transporter, RND family, MFP subunit.
 
 
 0.817
LO55_2349
RND_mfp: efflux transporter, RND family, MFP subunit.
 
 
 0.814
LO55_2879
DTW domain protein.
       0.773
LO55_2880
Radical SAM superfamily protein.
       0.594
LO55_2875
Dienelactone hydrolase family protein.
       0.495
LO55_3017
tonB dependent receptor family protein.
  
     0.490
LO55_5048
Hypothetical protein.
  
     0.489
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
  0.472
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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