Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LO55_2877RND_mfp: efflux transporter, RND family, MFP subunit. (358 aa)    
Predicted Functional Partners:
LO55_2876
Major Facilitator Superfamily protein.
 
 
 0.981
LO55_2878
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
 
 0.957
LO55_2350
efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 family protein; Belongs to the major facilitator superfamily.
 
 
 0.932
LO55_3844
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
 
 0.833
LO55_876
Outer membrane efflux family protein.
 
 0.815
LO55_2204
type_I_sec_TolC: type I secretion outer membrane, TolC family protein.
 
 0.809
LO55_2351
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
 
 0.796
oprM
Outer membrane protein oprM.
 
 0.789
LO55_3846
Major Facilitator Superfamily protein.
 
 
 0.789
LO55_1843
type_I_sec_TolC: type I secretion outer membrane, TolC family protein.
  
 0.784
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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