Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2879DTW domain protein. (204 aa)    
Predicted Functional Partners:
LO55_2876
Major Facilitator Superfamily protein.
       0.773
LO55_2877
RND_mfp: efflux transporter, RND family, MFP subunit.
       0.773
LO55_2878
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
       0.773
LO55_2880
Radical SAM superfamily protein.
       0.597
LO55_2875
Dienelactone hydrolase family protein.
       0.495
LO55_1221
cobW/HypB/UreG, nucleotide-binding domain protein.
  
 
   0.477
LO55_687
Hypothetical protein.
    
   0.405
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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