Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2880Radical SAM superfamily protein. (392 aa)    
Predicted Functional Partners:
LO55_2879
DTW domain protein.
       0.597
LO55_2876
Major Facilitator Superfamily protein.
       0.594
LO55_2877
RND_mfp: efflux transporter, RND family, MFP subunit.
       0.594
LO55_2878
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
       0.594
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
     
  0.500
ligD
NHEJ_ligase_prk: DNA ligase D.
 
   
 0.498
LO55_1523
Nucleoside recognition family protein.
     
 0.404
LO55_4079
Methyltransferase domain protein.
   
    0.403
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.