STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2883asp/Glu/Hydantoin racemase family protein. (251 aa)    
Predicted Functional Partners:
LO55_2886
Isochorismatase family protein.
 
 
 0.980
LO55_2885
Hypothetical protein.
 
  
 0.948
LO55_2884
Alpha/beta hydrolase family protein.
 
   
 0.945
LO55_2881
Cytochrome c family protein.
 
   
 0.752
LO55_884
Isochorismatase family protein.
 
 
 0.727
LO55_2891
6-hydroxynicotinate 3-monooxygenase.
 
  
 0.663
LO55_2888
Molybdopterin-binding domain of aldehyde dehydrogenase family protein.
 
     0.660
LO55_2859
Isochorismatase family protein.
    
 0.630
sdhA
sdhA_forward: succinate dehydrogenase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
 
  0.614
LO55_3569
cys/Met metabolism PLP-dependent enzyme family protein.
  
  
  0.514
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.