STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2885Hypothetical protein. (354 aa)    
Predicted Functional Partners:
LO55_2884
Alpha/beta hydrolase family protein.
 
  
 0.985
LO55_2886
Isochorismatase family protein.
 
  
 0.953
LO55_2883
asp/Glu/Hydantoin racemase family protein.
 
  
 0.948
LO55_2891
6-hydroxynicotinate 3-monooxygenase.
 
 
 0.948
LO55_2888
Molybdopterin-binding domain of aldehyde dehydrogenase family protein.
 
     0.814
LO55_2881
Cytochrome c family protein.
 
   
 0.805
LO55_2887
marR family protein.
 
  
 0.655
LO55_884
Isochorismatase family protein.
 
  
 0.499
LO55_2882
[2Fe-2S] binding domain protein.
  
  
 0.457
LO55_3438
NADH:flavin oxidoreductase / NADH oxidase family protein.
 
 
 0.443
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.