Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
LO55_29Histone deacetylase domain protein. (310 aa)    
Predicted Functional Partners:
LO55_3785
ATPase associated with various cellular activities family protein.
   
 0.816
LO55_3869
FAD dependent oxidoreductase family protein.
    
 0.799
LO55_3429
SET domain protein.
   
 0.794
LO55_3964
Sir2 family protein.
    
 0.793
LO55_1629
Hypothetical protein.
    
 0.792
htpG
Hsp90 family protein; Molecular chaperone. Has ATPase activity.
    
 0.767
LO55_3861
Ankyrin repeat family protein.
   
 0.748
LO55_4230
Ankyrin repeat family protein.
   
 0.748
LO55_1543
SNF2 family N-terminal domain protein.
    
 0.720
LO55_1576
SNF2 family N-terminal domain protein.
    
 0.720
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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