Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_2909S4 domain protein. (228 aa)    
Predicted Functional Partners:
LO55_2907
Methyltransferase domain protein.
       0.789
LO55_2908
Beta-eliminating lyase family protein.
       0.789
fdx
Fdx_isc: ferredoxin, 2Fe-2S type, ISC system.
       0.773
LO55_2910
Putative membrane protein.
       0.746
cmk
Cmk: cytidylate kinase.
  
  
 0.738
xth
exoDNase_III: exodeoxyribonuclease III.
  
    0.655
xth-2
exoDNase_III: exodeoxyribonuclease III.
  
    0.655
xth-3
exoDNase_III: exodeoxyribonuclease III.
  
    0.655
engA
Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
  
 0.637
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
 
 
   0.636
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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