STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_2952Hypothetical protein. (262 aa)    
Predicted Functional Partners:
LO55_2953
Sel1 repeat family protein.
       0.697
LO55_4485
Hypothetical protein.
  
     0.697
LO55_2277
Tubulin like family protein.
  
     0.685
LO55_2924
Hypothetical protein.
  
     0.675
LO55_576
tonB-dependent Receptor Plug domain protein.
  
     0.657
LO55_4948
Hypothetical protein.
  
     0.652
LO55_3726
Beta-lactamase superfamily domain protein.
  
     0.627
LO55_1683
Cysteine-rich secretory family protein.
  
     0.622
LO55_4490
Penicillin binding transpeptidase domain protein.
  
     0.616
LO55_1135
Hypothetical protein.
  
     0.602
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.