Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_3002NYN domain protein. (492 aa)    
Predicted Functional Partners:
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.709
LO55_1737
NYN domain protein.
  
     0.680
LO55_3003
Hypothetical protein.
       0.512
LO55_4696
Putative histone H1-like HC2.
  
     0.480
LO55_902
Hypothetical protein.
  
     0.466
LO55_4983
Hypothetical protein.
 
     0.441
LO55_3001
Sensory box protein.
       0.432
LO55_1312
Putative long-chain N-acyl amino acid synthase.
 
     0.413
LO55_4346
ftsX-like permease family protein.
 
 
   0.406
LO55_4347
Putative AttH.
  
     0.405
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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