STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3013Trypsin family protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides. (712 aa)    
Predicted Functional Partners:
LO55_1886
Hypothetical protein; Dipeptidyl peptidase IV (DPP IV) N-terminal region family protein.
  
   
 0.680
LO55_2027
igA Peptidase M64 family protein.
  
  
  0.626
phnD
3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding family protein.
   
    0.598
LO55_4692
Binding--dependent transport system inner membrane component family protein.
   
    0.598
LO55_62
Dipeptidyl peptidase IV.
  
   
 0.592
pnuC
NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC family protein.
       0.572
LO55_3015
AAA domain protein.
       0.572
LO55_2352
Peptidase M49 family protein.
  
     0.523
LO55_3011
GGDEF: diguanylate cyclase domain protein.
       0.518
LO55_318
tonB dependent receptor family protein.
  
     0.511
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.