Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nikEnickel_nikE: nickel import ATP-binding protein NikE; Belongs to the ABC transporter superfamily. (573 aa)    
Predicted Functional Partners:
LO55_303
Binding--dependent transport system inner membrane component family protein.
 
 0.998
LO55_304
Binding--dependent transport system inner membrane component family protein.
 
 
 0.996
LO55_1524
Bacterial extracellular solute-binding s, 5 Middle family protein.
 
 
 0.974
LO55_301
Rhodanese-like domain protein.
       0.429
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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