STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3022tonB-siderophor: TonB-dependent siderophore receptor family protein. (713 aa)    
Predicted Functional Partners:
LO55_2771
2OG-Fe(II) oxygenase superfamily protein.
 
  
 0.826
LO55_4651
tonB-siderophor: TonB-dependent siderophore receptor family protein.
 
  
 0.736
LO55_3889
tonB dependent receptor family protein.
  
  
 0.689
LO55_3691
tonB dependent receptor family protein.
  
  
 0.656
LO55_3704
tonB dependent receptor family protein.
  
  
 0.644
LO55_586
2OG-Fe(II) oxygenase superfamily protein.
  
  
 0.630
LO55_1638
tonB dependent receptor family protein.
  
   
 0.618
LO55_4136
Cytochrome c family protein.
  
  
 0.605
LO55_23
tonB-dependent Receptor Plug domain protein.
 
  
 0.543
LO55_1596
tonB dependent receptor family protein.
  
  
 0.540
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.