STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapCdapC_gpp: succinyldiaminopimelate transaminase. (404 aa)    
Predicted Functional Partners:
dapD
dapD: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Belongs to the transferase hexapeptide repeat family.
    
 0.940
dapE
Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
 
  
 0.914
LO55_1548
Glutamine amidotransferases class-II family protein.
    
 0.808
LO55_4021
Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.
 
  
 0.789
LO55_1199
Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.
 
  
 0.788
LO55_1409
Aminotransferase class IV family protein.
   
 0.783
LO55_1157
Aminotransferase class-V family protein.
  
 0.782
lpdA
lipoamide_DH: dihydrolipoyl dehydrogenase.
  
 0.772
pheA
CM_P2: chorismate mutase.
  
 
 0.770
LO55_2749
ACT domain protein.
 
 0.766
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.