STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3068Sulfatase-modifying factor enzyme 1 family protein. (330 aa)    
Predicted Functional Partners:
LO55_3069
Sulfatase family protein.
 
 
   0.983
LO55_4762
Sulfatase family protein.
 
 
   0.928
LO55_3735
Type I phosphodiesterase / nucleotide pyrophosphatase family protein.
 
 
   0.917
LO55_3070
tonB-siderophor: TonB-dependent siderophore receptor family protein.
       0.685
egtD
egtD_ergothio: dimethylhistidine N-methyltransferase.
  
 
 0.684
LO55_2199
Adenylate and Guanylate cyclase catalytic domain protein.
 
  
  0.636
LO55_3730
Haloacid dehalogenase-like hydrolase family protein.
 
     0.632
LO55_4472
Kinase domain protein.
  
 
 0.625
LO55_685
Glutamine amidotransferases class-II family protein.
  
 
 0.621
egtB
egtB_TIGR03440: ergothioneine biosynthesis EgtB family protein.
  
  
 
0.544
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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