STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_309tonB dependent receptor family protein. (899 aa)    
Predicted Functional Partners:
LO55_4732
tonB dependent receptor family protein.
  
  
  0.782
LO55_3704
tonB dependent receptor family protein.
  
  
  0.767
LO55_870
tonB-Xanth-Caul: TonB-dependent receptor family protein.
  
     0.755
LO55_2133
Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein.
  
     0.708
LO55_2332
NHL repeat family protein.
  
 
   0.672
LO55_4616
tonB-Xanth-Caul: TonB-dependent receptor family protein.
 
     0.669
LO55_432
tonB-dependent Receptor Plug domain protein.
  
  
  0.605
LO55_2924
Hypothetical protein.
  
     0.594
LO55_1135
Hypothetical protein.
  
     0.588
asaP1
Toxic extracellular endopeptidase.
  
     0.585
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.