STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atoDAcetate CoA-transferase subunit alpha. (215 aa)    
Predicted Functional Partners:
LO55_3112
pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit.
 0.999
LO55_3506
pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit.
 0.999
LO55_3109
Phosphate acetyl/butaryl transferase family protein.
    
 0.844
LO55_4244
enoyl-CoA hydratase/isomerase family protein.
  
 
 0.810
LO55_977
enoyl-CoA hydratase/isomerase family protein.
  
 
 0.810
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
     
 0.795
paaN
paaN-DH: phenylacetic acid degradation protein paaN.
  
 
 0.769
LO55_3108
Hypothetical protein.
       0.752
LO55_1500
HMGL-like family protein.
  
 
 0.732
LO55_1502
D-ala D-ala ligase family protein.
  
  
 0.719
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.