STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3112pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit. (227 aa)    
Predicted Functional Partners:
atoD
Acetate CoA-transferase subunit alpha.
 0.999
LO55_3505
pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit.
 0.999
LO55_4244
enoyl-CoA hydratase/isomerase family protein.
  
 0.837
LO55_977
enoyl-CoA hydratase/isomerase family protein.
  
 0.837
LO55_3109
Phosphate acetyl/butaryl transferase family protein.
  
 
 0.806
paaN
paaN-DH: phenylacetic acid degradation protein paaN.
  
 0.768
LO55_1500
HMGL-like family protein.
  
 
 0.753
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
       0.730
LO55_2673
Carboxymuconolactone decarboxylase family protein.
  
 
 0.705
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.
  
 
 0.701
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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