LO55_314 protein (Massilia timonae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LO55_314

Carbon-nitrogen hydrolase family protein. (265 aa)

Predicted Functional Partners:

LO55_1548

0.918

LO55_315

0.855

LO55_236

0.800

LO55_2894

0.797

LO55_1431

0.724

LO55_137

0.718

uca

0.718

LO55_1932

0.717

maeB

0.717

LO55_3426

0.715

Your Current Organism:

Massilia timonae

NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LO55_137	LO55_1431	LO55_137	LO55_1431	2Fe-2S iron-sulfur cluster binding domain protein.	Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	0.909
LO55_137	LO55_1548	LO55_137	LO55_1548	2Fe-2S iron-sulfur cluster binding domain protein.	Glutamine amidotransferases class-II family protein.	0.903
LO55_137	LO55_1932	LO55_137	LO55_1932	2Fe-2S iron-sulfur cluster binding domain protein.	Malic enzyme, NAD binding domain protein; Belongs to the malic enzymes family.	0.525
LO55_137	LO55_236	LO55_137	LO55_236	2Fe-2S iron-sulfur cluster binding domain protein.	Hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	0.845
LO55_137	LO55_314	LO55_137	LO55_314	2Fe-2S iron-sulfur cluster binding domain protein.	Carbon-nitrogen hydrolase family protein.	0.718
LO55_137	LO55_3426	LO55_137	LO55_3426	2Fe-2S iron-sulfur cluster binding domain protein.	4Fe-4S binding domain protein.	0.960
LO55_137	maeB	LO55_137	LO55_3343	2Fe-2S iron-sulfur cluster binding domain protein.	NADP-dependent malic enzyme.	0.579
LO55_137	uca	LO55_137	LO55_3296	2Fe-2S iron-sulfur cluster binding domain protein.	Urea_carbox: urea carboxylase.	0.862
LO55_1431	LO55_137	LO55_1431	LO55_137	Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	2Fe-2S iron-sulfur cluster binding domain protein.	0.909
LO55_1431	LO55_1548	LO55_1431	LO55_1548	Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Glutamine amidotransferases class-II family protein.	0.924
LO55_1431	LO55_1932	LO55_1431	LO55_1932	Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Malic enzyme, NAD binding domain protein; Belongs to the malic enzymes family.	0.520
LO55_1431	LO55_314	LO55_1431	LO55_314	Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Carbon-nitrogen hydrolase family protein.	0.724
LO55_1431	LO55_3426	LO55_1431	LO55_3426	Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	4Fe-4S binding domain protein.	0.798
LO55_1431	maeB	LO55_1431	LO55_3343	Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	NADP-dependent malic enzyme.	0.515
LO55_1431	uca	LO55_1431	LO55_3296	Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Urea_carbox: urea carboxylase.	0.875
LO55_1548	LO55_137	LO55_1548	LO55_137	Glutamine amidotransferases class-II family protein.	2Fe-2S iron-sulfur cluster binding domain protein.	0.903
LO55_1548	LO55_1431	LO55_1548	LO55_1431	Glutamine amidotransferases class-II family protein.	Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	0.924
LO55_1548	LO55_1932	LO55_1548	LO55_1932	Glutamine amidotransferases class-II family protein.	Malic enzyme, NAD binding domain protein; Belongs to the malic enzymes family.	0.466
LO55_1548	LO55_314	LO55_1548	LO55_314	Glutamine amidotransferases class-II family protein.	Carbon-nitrogen hydrolase family protein.	0.918
LO55_1548	LO55_3426	LO55_1548	LO55_3426	Glutamine amidotransferases class-II family protein.	4Fe-4S binding domain protein.	0.920

page 1 of 4

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About