Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_3154Bacterial regulatory s, lacI family protein. (365 aa)    
Predicted Functional Partners:
LO55_1548
Glutamine amidotransferases class-II family protein.
    
 
 0.839
LO55_719
PTS_HPr_: phosphocarrier, HPr family protein.
 
 
 
 0.755
LO55_3036
Hypothetical protein; Glycosyl-hydrolase 97 N-terminal family protein.
  
  
  0.641
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
   0.632
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
   0.599
pheT
pheT_bact: phenylalanine--tRNA ligase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.599
ribB-2
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
   0.597
exoP
Exo-1,3/1,4-beta-glucanase; Belongs to the glycosyl hydrolase 3 family.
 
  
  0.588
cdase
Cyclomaltodextrinase; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.564
LO55_3034
tonB-Xanth-Caul: TonB-dependent receptor family protein.
  
     0.564
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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