Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xynBXylan beta-1,4-xylosidase; Belongs to the glycosyl hydrolase 43 family. (542 aa)    
Predicted Functional Partners:
LO55_3159
Glycosyl hydrolase family protein; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.847
LO55_3157
Major Facilitator Superfamily protein.
 
     0.809
LO55_3158
D-glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
       0.773
LO55_184
alpha-L-arabinofuranosidase family protein.
 
  
 0.683
LO55_3151
Glycosyl hydrolase 10 family protein.
 
  
 0.633
LO55_3647
Hypothetical protein.
  
  
  0.623
LO55_3680
Hypothetical protein.
  
  
  0.618
LO55_3692
Glycosyl hydrolases 2 family protein; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.592
LO55_4175
Glycosyl hydrolases 2 family protein; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.576
LO55_3821
GDSL-like Lipase/Acylhydrolase family protein.
  
  
  0.573
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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