STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3158D-glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (456 aa)    
Predicted Functional Partners:
kdgD
kdgD: 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
  
 0.921
garD
galactar-dH20: galactarate dehydratase.
 
 
 0.914
LO55_3157
Major Facilitator Superfamily protein.
 
  
 0.820
xynB
Xylan beta-1,4-xylosidase; Belongs to the glycosyl hydrolase 43 family.
       0.773
LO55_3159
Glycosyl hydrolase family protein; Belongs to the glycosyl hydrolase 67 family.
       0.654
LO55_3347
Hypothetical protein; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain protein.
  
  
 0.587
LO55_4359
Dioxygenase family protein.
  
 
 0.548
LO55_2238
Hypothetical protein; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain protein.
 
  
 
0.545
gudD
Glucar-dehydr: glucarate dehydratase.
 
  
 
0.545
LO55_4215
Aldehyde dehydrogenase family protein.
  
  
 0.455
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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