STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_3160tonB-Xanth-Caul: TonB-dependent receptor family protein. (1026 aa)    
Predicted Functional Partners:
LO55_2297
Lycopene cyclase family protein.
 
     0.762
LO55_1291
sapC family protein.
 
     0.744
LO55_4935
ABC-2 transporter family protein.
  
     0.730
LO55_513
Glycosyl hydrolases 43 family protein; Belongs to the glycosyl hydrolase 43 family.
  
     0.728
LO55_1290
Cupin-like domain protein.
 
     0.727
LO55_1620
tonB dependent receptor family protein.
  
     0.719
LO55_2811
Hypothetical protein.
 
     0.699
LO55_2813
pepSY-associated TM helix family protein.
 
     0.698
LO55_2812
Hypothetical protein.
  
     0.684
LO55_4934
ABC-2 transporter family protein.
  
     0.684
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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