Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_3161Fumarylacetoacetate (FAA) hydrolase family protein. (394 aa)    
Predicted Functional Partners:
LO55_3163
SMP-30/Gluconolaconase/LRE-like region family protein.
 
  
  0.939
LO55_3164
Dehydratase family protein; Belongs to the IlvD/Edd family.
 
  
 0.926
LO55_3162
Short chain dehydrogenase family protein.
 
  
  0.893
LO55_186
Short chain dehydrogenase family protein.
  
  
  0.823
LO55_187
Fumarylacetoacetate (FAA) hydrolase family protein.
 
     0.736
LO55_188
Dehydratase family protein; Belongs to the IlvD/Edd family.
 
  
 0.719
LO55_3824
Aldehyde dehydrogenase family protein.
 
  
 0.678
LO55_4215
Aldehyde dehydrogenase family protein.
 
  
 0.677
LO55_4219
Short chain dehydrogenase family protein.
  
  
  0.663
LO55_3827
SMP-30/Gluconolaconase/LRE-like region family protein.
 
  
  0.629
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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