STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LO55_32144Fe-4S iron sulfur cluster binding s, NifH/frxC family protein. (269 aa)    
Predicted Functional Partners:
LO55_3213
parB_part: ParB/RepB/Spo0J family partition domain protein.
  
 
 0.986
LO55_1423
parB_part: ParB/RepB/Spo0J family partition domain protein; Belongs to the ParB family.
 
 
 0.961
LO55_3212
Putative membrane protein.
       0.773
LO55_1638
tonB dependent receptor family protein.
    
 
 0.754
LO55_3317
tonB-Xanth-Caul: TonB-dependent receptor family protein.
    
 
 0.754
LO55_4616
tonB-Xanth-Caul: TonB-dependent receptor family protein.
    
 
 0.754
LO55_758
tonB dependent receptor family protein.
    
 
 0.754
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
  
 
 0.684
hda
dnaA_homol_Hda: DnaA regulatory inactivator Hda; Belongs to the DnaA family.
  
 
 0.634
LO55_2268
Hypothetical protein.
  
 
 0.634
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.