Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_3237DSBA-like thioredoxin domain protein. (220 aa)    
Predicted Functional Partners:
LO55_3236
Disulfide bond formation DsbB family protein.
 
 
 0.985
LO55_3235
2A0601: heavy metal efflux pump, CzcA family protein.
       0.773
dsbB
Disulfide bond formation DsbB family protein; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein; Belongs to the DsbB family.
  
 
 0.759
dsbD
Cytochrome C biogenesis transmembrane region family protein; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps. Belongs to the thioredoxin family. DsbD subfamily.
  
 
 0.757
LO55_4048
Cytochrome C biogenesis transmembrane region family protein.
  
 
 0.757
LO55_5103
Cytochrome C biogenesis transmembrane region family protein.
  
 
 0.697
LO55_3239
Cation efflux family protein.
 
     0.684
LO55_3233
Outer membrane efflux family protein.
       0.651
LO55_3234
RND_mfp: efflux transporter, RND family, MFP subunit.
       0.651
cadA
ATPase-IB2_Cd: cadmium-translocating P-type ATPase.
 
 
   0.631
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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