STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cadAATPase-IB2_Cd: cadmium-translocating P-type ATPase. (835 aa)    
Predicted Functional Partners:
merP
merP: mercuric transport protein periplasmic component.
 
 
 0.890
LO55_4113
Heavy-metal-associated domain protein.
  
 
 0.870
LO55_3239
Cation efflux family protein.
 
  
 0.845
LO55_3237
DSBA-like thioredoxin domain protein.
 
 
 
 0.645
LO55_3235
2A0601: heavy metal efflux pump, CzcA family protein.
 
   
 0.614
LO55_3233
Outer membrane efflux family protein.
 
  
 0.604
LO55_3236
Disulfide bond formation DsbB family protein.
     
 0.537
LO55_3234
RND_mfp: efflux transporter, RND family, MFP subunit.
 
   
 0.536
LO55_4123
Cupredoxin-like domain protein.
    0.506
LO55_4112
copper_res_A: copper-resistance, CopA family protein.
 
  
 0.502
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.