Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_3239Cation efflux family protein. (209 aa)    
Predicted Functional Partners:
cadA
ATPase-IB2_Cd: cadmium-translocating P-type ATPase.
 
  
 0.835
LO55_3236
Disulfide bond formation DsbB family protein.
 
     0.714
LO55_3237
DSBA-like thioredoxin domain protein.
 
     0.684
LO55_3235
2A0601: heavy metal efflux pump, CzcA family protein.
 
   
 0.636
LO55_607
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
    0.546
epsI
epsI_fam: EpsI family protein.
    
   0.545
xrt
8TM_EpsH: exosortase family protein.
    
   0.545
LO55_3233
Outer membrane efflux family protein.
 
   
 0.539
LO55_3526
CDF: cation diffusion facilitator transporter family protein.
 
     0.500
LO55_3914
ZIP Zinc transporter family protein.
   
 0.452
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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