STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cadA-2ATPase-IB2_Cd: cadmium-translocating P-type ATPase. (781 aa)    
Predicted Functional Partners:
LO55_4113
Heavy-metal-associated domain protein.
  
 
 0.882
merP
merP: mercuric transport protein periplasmic component.
  
 
 0.870
LO55_3242
Putative cadmium resistance factor.
       0.686
cadR-2
cadR-PbrR: Cd(II)/Pb(II)-responsive transcriptional regulator.
 
  
 0.656
czcC-2
Cobalt-zinc-cadmium resistance protein CzcC.
 
  
 0.536
czcA-2
Cobalt-zinc-cadmium resistance protein CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.521
LO55_4123
Cupredoxin-like domain protein.
 
    0.466
czcB-2
Cobalt-zinc-cadmium resistance protein CzcB.
     
 0.456
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
    0.426
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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