Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LO55_3247Hypothetical protein. (549 aa)    
Predicted Functional Partners:
LO55_2262
PAP2 superfamily protein.
 
   
 0.741
LO55_4226
aspartyl/Asparaginyl beta-hydroxylase family protein.
     
 0.702
LO55_3246
Prokaryotic diacylglycerol kinase family protein.
 
   
 0.640
LO55_3248
Hypothetical protein.
       0.615
LO55_3560
Hypothetical protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
    
   0.537
LO55_1156
Glycosyltransferase 36 associated family protein.
   
 
 0.473
LO55_2760
Glycosyltransferase like 2 family protein.
   
 
 0.473
LO55_1957
Putative membrane protein.
  
 
 0.463
LO55_4708
Dolichyl-phosphate-mannose-mannosyltransferase family protein.
  
 
 0.463
flgG
flgG_G_neg: flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
    
 
 0.439
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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