Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LO55_325tonB dependent receptor family protein. (966 aa)    
Predicted Functional Partners:
LO55_3889
tonB dependent receptor family protein.
  
  
  0.758
LO55_3704
tonB dependent receptor family protein.
  
  
  0.744
LO55_3691
tonB dependent receptor family protein.
  
  
  0.721
LO55_4774
tonB dependent receptor family protein.
  
  
  0.718
LO55_2418
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
 
 
  0.712
LO55_1638
tonB dependent receptor family protein.
 
     0.687
LO55_1596
tonB dependent receptor family protein.
  
  
  0.663
LO55_4732
tonB dependent receptor family protein.
  
  
  0.642
LO55_2569
tonB dependent receptor family protein.
  
  
  0.613
LO55_1165
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
 
 
  0.596
Your Current Organism:
Massilia timonae
NCBI taxonomy Id: 47229
Other names: CCUG 45783, CIP 105350, Janthinobacterium sp. R2-11, M. timonae, Massilia timonae La Scola et al. 2000 emend. Lindquist et al. 2003, Timone isolate, strain UR/MT95
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